Package: REPTILE 1.0

REPTILE: Regulatory DNA Element Prediction

Predicting regulatory DNA elements based on epigenomic signatures. This package is more of a set of building blocks than a direct solution. REPTILE regulatory prediction pipeline is built on this R package. See <https://github.com/yupenghe/REPTILE> for more information.

Authors:Yupeng He

REPTILE_1.0.tar.gz
REPTILE_1.0.zip(r-4.6)REPTILE_1.0.zip(r-4.5)
REPTILE_1.0.tgz(r-4.6-any)REPTILE_1.0.tgz(r-4.5-any)
REPTILE_1.0.tar.gz(r-4.6-any)
REPTILE_1.0.tgz(r-4.5-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
REPTILE/json (API)

# Install 'REPTILE' in R:
install.packages('REPTILE', repos = c('https://yupenghe.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yupenghe/reptile/issues

Datasets:
  • rsd - REPTILE sample data

On CRAN:

Conda:

1.78 score 6 scripts 280 downloads 6 mentions 12 exports 10 dependencies

Last updated from:88a5f5425f. Checks:4 OK, 5 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK102
source / vignettesOK151
linux-release-x86_64OK101
macos-release-arm64FAIL98
macos-oldrel-arm64FAIL104
windows-develFAIL66
windows-releaseFAIL50
windows-oldrelFAIL47
wasm-releaseOK99

Exports:calculate_epimark_deviationget_option_parser_compute_scoreget_option_parser_evaluationget_option_parser_trainingread_epigenomic_dataread_labelreptile_eval_predictionreptile_predictreptile_predict_genome_widereptile_predict_one_modereptile_trainreptile_train_one_mode

Dependencies:bitopscaToolscodetoolsdoParallelfluxforeachgetoptiteratorsoptparserandomForest